Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5768

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14135 and 14136 are separated by 833 nucleotides mRNA_5767: 14135 - K02606 ORC4 origin recognition complex subunit 4, at 890,785 to 894,210 14135 mRNA_5768: 14136 - Hypothetical Protein, at 895,044 to 899,242 14136

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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894,316 - -0.0
894,321 - +0.8
894,366 + +2.2
894,375 - +2.0
894,483 + +2.3
894,672 + +1.5
894,676 - -0.7
894,960 + +0.3
895,054 + +1.7
895,111 - -0.4
895,231 - +1.3
895,815 - 14136 mRNA_5768 0.18 -0.4
895,937 - 14136 mRNA_5768 0.21 +0.5
895,956 + 14136 mRNA_5768 0.22 +1.2
896,136 - 14136 mRNA_5768 0.26 -0.2
896,258 - 14136 mRNA_5768 0.29 +0.2
896,413 + 14136 mRNA_5768 0.33 +0.8
896,865 + 14136 mRNA_5768 0.43 +0.7
897,105 - 14136 mRNA_5768 0.49 -0.4
897,144 + 14136 mRNA_5768 0.50 +0.4
897,734 - 14136 mRNA_5768 0.64 +0.4
897,855 - 14136 mRNA_5768 0.67 -0.2
897,903 - 14136 mRNA_5768 0.68 +1.9
898,060 - 14136 mRNA_5768 0.72 +0.8
898,776 - 14136 mRNA_5768 0.89 +1.0
898,838 - -0.3
898,924 + +1.3
898,943 + +0.1
899,187 - -0.1
899,207 + +1.6
899,272 + -0.2
899,521 - +0.3
899,546 + +0.8
900,216 - +1.4

Or see this region's nucleotide sequence