Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5822

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14189 and 14190 are separated by 774 nucleotides14190 and 14191 are separated by 469 nucleotides mRNA_5821: 14189 - SUPERFAMILY--SSF52047, at 1,023,617 to 1,025,042 14189 mRNA_5822: 14190 - SUPERFAMILY--SSF52047, at 1,025,817 to 1,027,407 14190 mRNA_5823: 14191 - SUPERFAMILY--SSF52047, at 1,027,877 to 1,028,999 14191

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,024,967 - +0.2
1,024,981 - +0.3
1,024,987 + +1.5
1,025,425 - +1.7
1,025,449 + +2.1
1,025,459 + +0.1
1,025,468 + -0.3
1,025,471 + +0.5
1,025,749 + -0.8
1,025,892 + +0.2
1,026,180 - 14190 mRNA_5822 0.23 +0.3
1,026,189 + 14190 mRNA_5822 0.23 +1.6
1,026,807 + 14190 mRNA_5822 0.62 +1.9
1,026,890 + 14190 mRNA_5822 0.67 +0.8
1,027,051 + 14190 mRNA_5822 0.78 +1.4
1,027,203 + 14190 mRNA_5822 0.87 +1.5
1,027,301 - +0.1
1,027,347 + +0.1
1,027,476 + -0.8
1,027,492 + -1.3
1,027,612 - +0.2
1,027,615 - -0.6
1,027,665 - -0.2
1,027,789 - +0.7
1,028,066 - 14191 mRNA_5823 0.17 -0.2
1,028,097 + 14191 mRNA_5823 0.20 -0.4
1,028,099 + 14191 mRNA_5823 0.20 -0.1
1,028,392 + 14191 mRNA_5823 0.46 +0.9

Or see this region's nucleotide sequence