Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5881

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14248 and 14249 are separated by 516 nucleotides14249 and 14250 are separated by 305 nucleotides mRNA_5880: 14248 - HMMPfam-Transglycosylase SLT domain-PF01464,SUPERFAMILY--SSF53955, at 1,152,556 to 1,154,002 14248 mRNA_5881: 14249 - BLAST related to embryonic protein DC-8 [Ustilago hordei], at 1,154,519 to 1,154,935 14249 mRNA_5882: 14250 - K15732 CTDP1, FCP1 RNA polymerase II subunit A C-terminal domain phosphatase, at 1,155,241 to 1,158,435 14250

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,153,599 + 14248 mRNA_5880 0.72 +0.6
1,153,783 + 14248 mRNA_5880 0.85 -0.6
1,153,913 + +2.4
1,154,956 - -0.1
1,154,968 + +1.1
1,154,973 - +0.4
1,155,089 - -0.1
1,155,092 - +0.4
1,155,102 + -0.6

Or see this region's nucleotide sequence