Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5883

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14250 and 14251 are separated by 86 nucleotides14251 and 14252 are separated by 251 nucleotides mRNA_5882: 14250 - K15732 CTDP1, FCP1 RNA polymerase II subunit A C-terminal domain phosphatase, at 1,155,241 to 1,158,435 14250 mRNA_5883: 14251 - K09668 LARGE glycosyltransferase-like protein LARGE, at 1,158,522 to 1,160,297 14251 mRNA_5884: 14252 - K13830 ARO1 pentafunctional AROM polypeptide, at 1,160,549 to 1,165,878 14252

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,158,015 + 14250 mRNA_5882 0.87 +2.3
1,158,151 - +0.6
1,158,560 - +0.4
1,159,170 - 14251 mRNA_5883 0.36 +0.4
1,159,326 - 14251 mRNA_5883 0.45 -0.7
1,159,327 - 14251 mRNA_5883 0.45 +0.3
1,159,327 - 14251 mRNA_5883 0.45 +0.6
1,159,736 + 14251 mRNA_5883 0.68 +1.8
1,159,743 + 14251 mRNA_5883 0.69 +0.9
1,159,752 - 14251 mRNA_5883 0.69 +1.1
1,159,879 + 14251 mRNA_5883 0.76 +0.2
1,159,886 - 14251 mRNA_5883 0.77 -0.8
1,160,470 - +0.0
1,160,480 - -0.4
1,160,501 + +1.8

Or see this region's nucleotide sequence