Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5955

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14322 and 14323 are separated by 986 nucleotides14323 and 14324 are separated by 661 nucleotides mRNA_5954: 14322 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 1,317,942 to 1,318,810 14322 mRNA_5955: 14323 - K11654 SMARCA5, SNF2H, ISWI SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5, at 1,319,797 to 1,323,881 14323 mRNA_5956: 14324 - KOG2238 Uncharacterized conserved protein TEX2, contains PH domain, at 1,324,543 to 1,328,402 14324

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,318,919 - -0.4
1,318,935 + +0.0
1,319,001 + +0.8
1,319,006 + +1.9
1,319,023 + +0.3
1,319,204 + +0.8
1,319,233 - +0.6
1,319,236 - +1.1
1,319,346 + +1.5
1,319,416 - +0.3
1,319,472 - +0.8
1,319,473 + +0.9
1,319,556 - +1.1
1,319,686 - +2.1
1,319,692 - +0.3
1,324,213 + -0.9
1,324,242 + +2.2
1,324,354 + -0.8
1,324,369 + -1.8
1,324,370 - -1.0
1,324,378 + -0.3
1,324,390 + -0.4
1,324,813 - +3.4

Or see this region's nucleotide sequence