Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6009

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14376 and 14377 are separated by 497 nucleotides14377 and 14378 are separated by 111 nucleotides mRNA_6008: 14376 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 1,440,694 to 1,441,642 14376 mRNA_6009: 14377 - K13939 FOL1 dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase / dihydropteroate synthase, at 1,442,140 to 1,444,838 14377 mRNA_6010: 14378 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF103473, at 1,444,950 to 1,447,121 14378

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,441,182 + 14376 mRNA_6008 0.51 -0.1
1,441,319 - 14376 mRNA_6008 0.66 +1.4
1,441,666 + -0.9
1,441,672 - +0.1
1,441,758 - +0.1
1,441,781 + +0.0
1,441,813 + -0.5
1,441,816 + -0.5
1,441,824 + +0.2
1,441,845 - -0.1
1,441,890 + -0.4
1,441,896 - +0.4
1,441,927 + -1.3
1,442,014 - -0.2
1,442,135 + +0.5
1,444,862 - -1.3
1,444,874 + -0.1
1,444,904 + +1.2
1,444,908 - +0.7
1,445,049 + +1.0
1,445,049 - -2.7
1,445,064 + +0.1
1,445,065 + +0.4
1,445,066 + +0.6
1,445,354 + 14378 mRNA_6010 0.19 +0.7
1,445,365 - 14378 mRNA_6010 0.19 +0.3
1,445,788 - 14378 mRNA_6010 0.39 +0.5

Or see this region's nucleotide sequence