Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6036

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14403 and 14404 are separated by 246 nucleotides14404 and 14405 are separated by 269 nucleotides mRNA_6035: 14403 - Hypothetical Protein, at 1,493,029 to 1,494,012 14403 mRNA_6036: 14404 - Hypothetical Protein, at 1,494,259 to 1,495,316 14404 mRNA_6037: 14405 - SUPERFAMILY--SSF52047, at 1,495,586 to 1,496,740 14405

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,493,315 + 14403 mRNA_6035 0.29 -0.2
1,493,388 + 14403 mRNA_6035 0.36 +1.6
1,493,519 + 14403 mRNA_6035 0.50 -0.0
1,493,529 + 14403 mRNA_6035 0.51 +0.2
1,493,745 + 14403 mRNA_6035 0.73 -0.5
1,493,894 - 14403 mRNA_6035 0.88 -1.2
1,494,020 - +0.4
1,494,190 + +2.1
1,494,270 + +1.8
1,494,272 + +1.0
1,494,338 + +1.1
1,494,370 + 14404 mRNA_6036 0.10 -1.0
1,494,688 + 14404 mRNA_6036 0.41 +0.3
1,494,888 - 14404 mRNA_6036 0.59 -0.4
1,494,935 + 14404 mRNA_6036 0.64 -1.0
1,494,938 - 14404 mRNA_6036 0.64 +0.0
1,494,989 + 14404 mRNA_6036 0.69 -0.3
1,495,176 + 14404 mRNA_6036 0.87 +1.9
1,495,245 + +1.5
1,495,380 + +0.7
1,495,555 + +1.0
1,495,626 - -0.3
1,495,666 + -1.5
1,495,676 + +0.4
1,495,680 + +1.8
1,495,693 + +0.7
1,495,751 - 14405 mRNA_6037 0.14 +2.4
1,495,811 - 14405 mRNA_6037 0.19 +0.4
1,496,275 + 14405 mRNA_6037 0.60 -0.2

Or see this region's nucleotide sequence