Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6052

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14419 and 14420 are separated by 199 nucleotides14420 and 14421 are separated by 296 nucleotides mRNA_6051: 14419 - Hypothetical Protein, at 1,524,087 to 1,525,475 14419 mRNA_6052: 14420 - Hypothetical Protein, at 1,525,675 to 1,528,680 14420 mRNA_6053: 14421 - Hypothetical Protein, at 1,528,977 to 1,530,261 14421

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,524,694 + 14419 mRNA_6051 0.44 +1.3
1,524,786 + 14419 mRNA_6051 0.50 -0.9
1,524,941 + 14419 mRNA_6051 0.61 +1.0
1,524,953 + 14419 mRNA_6051 0.62 -0.8
1,524,957 - 14419 mRNA_6051 0.63 +0.8
1,524,969 - 14419 mRNA_6051 0.63 +1.7
1,525,093 - 14419 mRNA_6051 0.72 +1.1
1,525,147 - 14419 mRNA_6051 0.76 -0.5
1,525,253 + 14419 mRNA_6051 0.84 +0.1
1,525,264 - 14419 mRNA_6051 0.85 +0.9
1,525,410 - +0.9
1,525,677 - -0.2
1,525,679 + -0.4
1,525,684 + -0.9
1,525,703 - -0.0
1,525,708 + +0.6
1,525,715 - +0.6
1,525,809 - +1.0
1,525,839 - +0.2
1,525,840 - -0.2
1,525,844 - -1.2
1,525,846 + +1.6
1,526,216 + 14420 mRNA_6052 0.18 +2.2
1,526,277 - 14420 mRNA_6052 0.20 -0.4
1,526,286 - 14420 mRNA_6052 0.20 -0.4
1,526,700 - 14420 mRNA_6052 0.34 +0.1
1,526,710 + 14420 mRNA_6052 0.34 -0.2
1,526,770 + 14420 mRNA_6052 0.36 +1.7
1,527,134 - 14420 mRNA_6052 0.49 +0.0
1,527,143 - 14420 mRNA_6052 0.49 +0.4
1,527,159 - 14420 mRNA_6052 0.49 +0.9
1,527,292 + 14420 mRNA_6052 0.54 -0.4
1,527,293 + 14420 mRNA_6052 0.54 +1.2
1,527,294 - 14420 mRNA_6052 0.54 -0.3
1,527,451 - 14420 mRNA_6052 0.59 -0.2
1,527,452 - 14420 mRNA_6052 0.59 -0.3
1,527,487 - 14420 mRNA_6052 0.60 -1.3
1,527,536 - 14420 mRNA_6052 0.62 +0.0
1,527,578 - 14420 mRNA_6052 0.63 -0.1
1,527,580 - 14420 mRNA_6052 0.63 -0.4
1,527,623 + 14420 mRNA_6052 0.65 +0.1
1,527,633 + 14420 mRNA_6052 0.65 -0.6
1,527,780 + 14420 mRNA_6052 0.70 -0.5
1,527,984 + 14420 mRNA_6052 0.77 +2.0
1,527,991 - 14420 mRNA_6052 0.77 +0.4
1,528,215 + 14420 mRNA_6052 0.84 -0.4
1,528,322 + 14420 mRNA_6052 0.88 +0.2
1,528,454 - +1.1
1,528,745 + +0.0
1,528,901 - -0.4
1,528,909 + +0.5
1,528,930 - +0.2
1,528,930 - +0.1
1,528,931 - -0.5
1,529,034 - -0.7
1,529,059 + +0.7
1,529,143 + 14421 mRNA_6053 0.13 +0.6
1,529,143 - 14421 mRNA_6053 0.13 -0.0
1,529,143 + 14421 mRNA_6053 0.13 +1.9
1,529,166 - 14421 mRNA_6053 0.15 +0.4
1,529,180 + 14421 mRNA_6053 0.16 +1.4
1,529,184 + 14421 mRNA_6053 0.16 +2.0
1,529,308 - 14421 mRNA_6053 0.26 +0.2
1,529,316 - 14421 mRNA_6053 0.26 +2.1
1,529,334 + 14421 mRNA_6053 0.28 +1.8
1,529,464 - 14421 mRNA_6053 0.38 +0.7
1,529,568 - 14421 mRNA_6053 0.46 -0.5
1,529,652 + 14421 mRNA_6053 0.53 -0.3

Or see this region's nucleotide sequence