Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6080

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14447 and 14448 are separated by 342 nucleotides14448 and 14449 are separated by 86 nucleotides mRNA_6079: 14447 - K12776 MEK1 meiosis-specific serine/threonine-protein kinase MEK1, at 1,594,108 to 1,596,398 14447 mRNA_6080: 14448 - KOG4379 Uncharacterized conserved protein (tumor antigen CML66 in humans), at 1,596,741 to 1,598,901 14448 mRNA_6081: 14449 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 1,598,988 to 1,602,551 14449

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,595,777 - 14447 mRNA_6079 0.73 +0.9
1,595,790 - 14447 mRNA_6079 0.73 -0.9
1,595,829 + 14447 mRNA_6079 0.75 -0.8
1,595,834 - 14447 mRNA_6079 0.75 +0.2
1,595,997 + 14447 mRNA_6079 0.82 +1.2
1,596,117 - 14447 mRNA_6079 0.88 -0.2
1,596,182 + -0.7
1,596,201 + +0.4
1,596,240 - +0.1
1,596,245 + +0.4
1,596,374 + +2.7
1,596,377 - +0.4
1,596,430 + +0.4
1,596,490 - -0.8
1,596,536 + +1.0
1,596,538 + +0.0
1,596,678 + -0.9
1,596,685 + +0.8
1,596,693 + +0.2
1,599,160 + -0.0
1,599,323 - -1.1
1,599,356 + 14449 mRNA_6081 0.10 +0.1
1,599,543 - 14449 mRNA_6081 0.16 -0.2
1,599,640 + 14449 mRNA_6081 0.18 -0.3
1,599,824 + 14449 mRNA_6081 0.23 -0.3

Or see this region's nucleotide sequence