Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6092

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14459 and 14460 are separated by 207 nucleotides14460 and 14461 are separated by 250 nucleotides mRNA_6091: 14459 - KOG1515 Arylacetamide deacetylase, at 1,626,072 to 1,627,990 14459 mRNA_6092: 14460 - K06639 CDC14 cell division cycle 14, at 1,628,198 to 1,631,375 14460 mRNA_6093: 14461 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 1,631,626 to 1,633,865 14461

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,627,313 + 14459 mRNA_6091 0.65 +1.3
1,627,583 - 14459 mRNA_6091 0.79 -0.5
1,627,595 + 14459 mRNA_6091 0.79 -0.7
1,627,627 - 14459 mRNA_6091 0.81 -1.1
1,627,840 - +0.7
1,627,883 - -2.1
1,627,909 + -0.4
1,627,912 + +2.2
1,627,920 + +0.9
1,628,036 + +0.8
1,628,204 + -0.3
1,628,218 + -0.2
1,628,470 + +0.1
1,628,473 + -0.0
1,628,484 - +0.9
1,628,686 - 14460 mRNA_6092 0.15 -0.1
1,629,115 + 14460 mRNA_6092 0.29 -0.5
1,629,185 + 14460 mRNA_6092 0.31 +1.6
1,629,236 - 14460 mRNA_6092 0.33 +1.9
1,629,306 + 14460 mRNA_6092 0.35 +0.7
1,629,352 + 14460 mRNA_6092 0.36 +0.9
1,629,823 + 14460 mRNA_6092 0.51 +2.2
1,629,934 - 14460 mRNA_6092 0.55 +0.6
1,629,988 - 14460 mRNA_6092 0.56 +1.5
1,630,026 + 14460 mRNA_6092 0.58 +0.3
1,630,188 - 14460 mRNA_6092 0.63 -0.2
1,630,414 + 14460 mRNA_6092 0.70 +1.1
1,630,856 - 14460 mRNA_6092 0.84 +1.0
1,630,994 - 14460 mRNA_6092 0.88 -0.2
1,631,003 - 14460 mRNA_6092 0.88 +0.7
1,631,018 + 14460 mRNA_6092 0.89 +0.2
1,631,473 + -0.1
1,631,889 + 14461 mRNA_6093 0.12 +0.7
1,631,903 + 14461 mRNA_6093 0.12 +1.1
1,632,293 + 14461 mRNA_6093 0.30 -0.4
1,632,329 - 14461 mRNA_6093 0.31 +0.4
1,632,333 + 14461 mRNA_6093 0.32 +1.4

Or see this region's nucleotide sequence