Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6096

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14463 and 14464 are separated by 918 nucleotides14464 and 14465 are separated by 288 nucleotides mRNA_6095: 14463 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 1,636,949 to 1,643,604 14463 mRNA_6096: 14464 - K05721 FGD2 FYVE, RhoGEF and PH domain containing 2, at 1,644,523 to 1,649,566 14464 mRNA_6097: 14465 - KOG4313 Thiamine pyrophosphokinase, at 1,649,855 to 1,650,926 14465

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,643,840 - -0.5
1,643,898 + +1.7
1,644,079 - +0.1
1,644,079 + +0.7
1,644,310 - +0.8
1,644,314 + +1.0
1,644,334 + +0.3
1,644,468 + -0.2
1,644,485 + +1.5
1,644,619 - -0.3
1,644,642 + -1.8
1,644,677 - +0.8
1,644,762 + +0.2
1,645,213 + 14464 mRNA_6096 0.14 +0.5
1,645,362 - 14464 mRNA_6096 0.17 +0.1
1,645,414 - 14464 mRNA_6096 0.18 -0.4
1,645,482 - 14464 mRNA_6096 0.19 +0.6
1,645,738 - 14464 mRNA_6096 0.24 -0.9
1,645,823 + 14464 mRNA_6096 0.26 +2.4
1,645,944 - 14464 mRNA_6096 0.28 -0.3
1,646,098 - 14464 mRNA_6096 0.31 +1.5
1,646,221 + 14464 mRNA_6096 0.34 +0.2
1,646,232 - 14464 mRNA_6096 0.34 -0.2
1,646,406 - 14464 mRNA_6096 0.37 +0.3
1,646,415 + 14464 mRNA_6096 0.38 +1.4
1,646,578 + 14464 mRNA_6096 0.41 +0.2
1,646,812 + 14464 mRNA_6096 0.45 -0.3
1,646,814 + 14464 mRNA_6096 0.45 -0.5
1,646,821 + 14464 mRNA_6096 0.46 +0.3
1,646,906 - 14464 mRNA_6096 0.47 +0.9
1,646,906 - 14464 mRNA_6096 0.47 +1.2
1,646,933 + 14464 mRNA_6096 0.48 +0.9
1,647,403 - 14464 mRNA_6096 0.57 +1.2
1,647,620 - 14464 mRNA_6096 0.61 +0.3
1,647,689 + 14464 mRNA_6096 0.63 -0.0
1,647,855 - 14464 mRNA_6096 0.66 +0.8
1,648,213 + 14464 mRNA_6096 0.73 +0.6
1,648,260 - 14464 mRNA_6096 0.74 +1.4
1,648,386 + 14464 mRNA_6096 0.77 -0.3
1,648,396 - 14464 mRNA_6096 0.77 +0.7
1,648,439 - 14464 mRNA_6096 0.78 -0.3
1,648,469 - 14464 mRNA_6096 0.78 -1.4
1,648,510 - 14464 mRNA_6096 0.79 -1.1
1,648,647 - 14464 mRNA_6096 0.82 +0.1
1,648,744 + 14464 mRNA_6096 0.84 -0.2
1,648,747 - 14464 mRNA_6096 0.84 +0.5
1,648,863 + 14464 mRNA_6096 0.86 -0.1
1,648,926 + 14464 mRNA_6096 0.87 -0.5
1,649,007 - 14464 mRNA_6096 0.89 +2.7
1,649,062 - +0.8
1,649,071 - +0.3
1,649,100 + -0.7
1,649,251 - -0.1
1,649,267 + -0.5
1,649,405 + +0.2
1,649,410 - +0.5
1,649,460 + -0.4
1,649,578 + +1.7
1,649,656 - +1.2
1,649,656 - +1.0
1,649,663 - -0.1
1,649,726 - -1.9
1,649,738 - -0.5
1,649,835 + -0.3
1,649,848 + +0.8
1,649,999 - 14465 mRNA_6097 0.13 -0.1
1,650,071 + 14465 mRNA_6097 0.20 +0.4
1,650,072 + 14465 mRNA_6097 0.20 +0.1
1,650,163 + 14465 mRNA_6097 0.29 -0.1
1,650,173 - 14465 mRNA_6097 0.30 +0.5
1,650,187 + 14465 mRNA_6097 0.31 +0.3
1,650,277 + 14465 mRNA_6097 0.39 -0.7
1,650,428 + 14465 mRNA_6097 0.53 +0.1
1,650,478 + 14465 mRNA_6097 0.58 +0.2

Or see this region's nucleotide sequence