Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6098

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14465 and 14466 overlap by 38 nucleotides14466 and 14467 are separated by 243 nucleotides mRNA_6097: 14465 - KOG4313 Thiamine pyrophosphokinase, at 1,649,855 to 1,650,926 14465 mRNA_6098: 14466 - Hypothetical Protein, at 1,650,889 to 1,652,213 14466 mRNA_6099: 14467 - KOG3091 Nuclear pore complex, p54 component (sc Nup57), at 1,652,457 to 1,654,232 14467

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,649,999 - 14465 mRNA_6097 0.13 -0.1
1,650,071 + 14465 mRNA_6097 0.20 +0.4
1,650,072 + 14465 mRNA_6097 0.20 +0.1
1,650,163 + 14465 mRNA_6097 0.29 -0.1
1,650,173 - 14465 mRNA_6097 0.30 +0.5
1,650,187 + 14465 mRNA_6097 0.31 +0.3
1,650,277 + 14465 mRNA_6097 0.39 -0.7
1,650,428 + 14465 mRNA_6097 0.53 +0.1
1,650,478 + 14465 mRNA_6097 0.58 +0.2
1,650,849 + +2.6
1,650,852 + +0.1
1,651,143 - 14466 mRNA_6098 0.19 +0.8
1,651,606 - 14466 mRNA_6098 0.54 -0.3
1,651,618 - 14466 mRNA_6098 0.55 +1.2
1,651,743 - 14466 mRNA_6098 0.64 -0.3
1,651,917 + 14466 mRNA_6098 0.78 -0.2
1,651,927 + 14466 mRNA_6098 0.78 -0.4
1,651,930 - 14466 mRNA_6098 0.79 -0.3
1,651,935 + 14466 mRNA_6098 0.79 -0.2
1,652,057 + 14466 mRNA_6098 0.88 +0.7
1,652,072 - 14466 mRNA_6098 0.89 +0.8
1,652,078 - 14466 mRNA_6098 0.90 +1.6
1,652,219 + +0.7
1,652,237 + -0.1
1,652,260 + +1.7
1,652,357 - -0.4
1,652,358 + +0.4

Or see this region's nucleotide sequence