Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6117

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14484 and 14485 are separated by 603 nucleotides14485 and 14486 are separated by 449 nucleotides mRNA_6116: 14484 - Hypothetical Protein, at 27,856 to 28,790 14484 mRNA_6117: 14485 - BLAST expressed protein [Schizophyllum commune H4-8], at 29,394 to 30,967 14485 mRNA_6118: 14486 - K03164 TOP2 DNA topoisomerase II, at 31,417 to 38,158 14486

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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28,481 + 14484 mRNA_6116 0.67 -0.1
28,671 - 14484 mRNA_6116 0.87 +0.6
28,724 + -0.3
28,965 + -1.1
29,023 - +2.5
29,091 + +0.0
29,123 - -0.0
29,142 + -0.1
29,394 - -1.4
29,527 - -0.3
29,785 - 14485 mRNA_6117 0.25 +0.4
29,935 - 14485 mRNA_6117 0.34 +0.4
30,340 - 14485 mRNA_6117 0.60 +0.2
30,935 + -0.3
31,090 + +0.0
31,217 - +0.4
31,353 + +0.2
31,360 - +1.2
31,371 + -0.3
31,373 + +0.7
31,389 - +0.1
31,502 - +0.3

Or see this region's nucleotide sequence