Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6119

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14486 and 14487 are separated by 176 nucleotides14487 and 14488 are separated by 149 nucleotides mRNA_6118: 14486 - K03164 TOP2 DNA topoisomerase II, at 31,417 to 38,158 14486 mRNA_6119: 14487 - K15280 SLC35C2 solute carrier family 35, member C2, at 38,335 to 41,391 14487 mRNA_6120: 14488 - K05954 FNTB protein farnesyltransferase subunit beta, at 41,541 to 43,349 14488

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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37,569 + +1.1
37,968 + -0.6
37,991 - -0.5
38,175 + -0.5
38,190 + +0.6
38,282 - +0.4
38,287 - +0.8
38,342 + +0.8
38,345 - +0.5
38,448 + +0.5
38,489 + -0.2
38,700 - 14487 mRNA_6119 0.12 +1.1
38,738 + 14487 mRNA_6119 0.13 +1.1
38,906 + 14487 mRNA_6119 0.19 +0.9
39,074 + 14487 mRNA_6119 0.24 -0.5
39,195 - 14487 mRNA_6119 0.28 -1.5
39,308 - 14487 mRNA_6119 0.32 +1.0
40,072 - 14487 mRNA_6119 0.57 +1.8
40,621 - 14487 mRNA_6119 0.75 +0.5
40,748 + 14487 mRNA_6119 0.79 +0.6
40,770 - 14487 mRNA_6119 0.80 +1.3
40,776 + 14487 mRNA_6119 0.80 +0.1
41,064 - 14487 mRNA_6119 0.89 +2.5
41,171 - -0.2
41,348 - +1.9
41,392 - -0.8
41,508 - -0.1

Or see this region's nucleotide sequence