Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6120

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14487 and 14488 are separated by 149 nucleotides mRNA_6119: 14487 - K15280 SLC35C2 solute carrier family 35, member C2, at 38,335 to 41,391 14487 mRNA_6120: 14488 - K05954 FNTB protein farnesyltransferase subunit beta, at 41,541 to 43,349 14488

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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40,621 - 14487 mRNA_6119 0.75 +0.5
40,748 + 14487 mRNA_6119 0.79 +0.6
40,770 - 14487 mRNA_6119 0.80 +1.3
40,776 + 14487 mRNA_6119 0.80 +0.1
41,064 - 14487 mRNA_6119 0.89 +2.5
41,171 - -0.2
41,348 - +1.9
41,392 - -0.8
41,508 - -0.1
43,252 - +0.3
43,264 - -0.0
43,396 - -0.2
43,432 - +0.1
43,733 - -0.3
43,755 - +0.7
43,898 - +0.2
43,913 - +0.3
43,923 + +0.5
43,946 + +1.1
43,953 - -0.1
43,967 + +0.3
44,005 + -0.6
44,047 - +0.7

Or see this region's nucleotide sequence