Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6141

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14509 and 14510 are separated by 812 nucleotides mRNA_6141: 14509 - HMMPfam-GGL domain-PF00631,SUPERFAMILY--SSF48670, at 106,663 to 106,926 14509 mRNA_6142: 14510 - Hypothetical Protein, at 107,739 to 108,173 14510

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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105,769 - +0.6
105,791 - +0.0
105,801 - +0.2
105,818 + +0.5
105,823 + +2.1
105,825 - -0.3
105,829 - +0.1
105,830 + +0.6
105,839 - +0.4
105,841 - -0.0
105,842 + -2.1
105,850 - -0.1
105,851 + -0.3
105,851 + -0.2
105,858 + +0.8
105,867 - -1.7
105,871 - +0.2
105,882 - +1.0
105,996 + +0.6
106,003 + -0.5
106,080 - -0.5
106,316 - +1.7
106,576 + +1.1
106,722 - 14509 mRNA_6141 0.22 +0.6
106,999 - +1.2
107,009 + +0.3
107,019 + +0.2
107,025 - +1.5
107,029 - -0.5
107,034 - +0.3
107,155 + +0.3
107,166 + +0.1
107,170 + +1.7
107,171 + -1.0
107,175 - -0.6
107,296 - +2.3
107,308 + -0.7
107,310 + +2.0
107,310 - +0.4
107,320 - -0.1
107,332 - +1.6
107,333 - +0.5
107,346 - +2.5
107,359 - +0.3
107,363 + +2.9
107,371 - +0.0
107,372 - -0.1
107,375 - +0.7
107,376 + -0.8
107,390 + +0.5
107,395 + +0.1
107,488 - +0.4
107,507 + +0.6
107,523 - -0.7
107,535 - +0.6
107,535 - +0.5
107,536 + +1.0
107,542 + +1.6
107,559 + -0.6
107,574 - -0.1
107,674 - +1.7
107,691 - +0.1
107,819 - 14510 mRNA_6142 0.18 +2.6

Or see this region's nucleotide sequence