Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6146

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14513 and 14514 are separated by 482 nucleotides mRNA_6145: 14513 - HMMPfam-Protein of unknown function (DUF2456)-PF10445, at 115,513 to 116,915 14513 mRNA_6146: 14514 - K02925 RP-L3e, RPL3 large subunit ribosomal protein L3e, at 117,398 to 118,882 14514

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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116,426 + 14513 mRNA_6145 0.65 +0.3
116,535 - 14513 mRNA_6145 0.73 -0.7
116,656 + 14513 mRNA_6145 0.81 -0.4
116,664 - 14513 mRNA_6145 0.82 -0.6
116,699 - 14513 mRNA_6145 0.85 -1.4
116,716 - 14513 mRNA_6145 0.86 +1.0
116,716 + 14513 mRNA_6145 0.86 -0.7
116,755 - 14513 mRNA_6145 0.89 +2.0
116,850 + +0.6
116,865 - -0.3
116,951 + +2.5
117,005 - -0.6
117,017 + +2.6
117,025 - -0.4
117,029 - +1.2
117,036 + -0.3
117,036 + +0.3
117,036 + +0.1
117,036 + +1.8
117,039 + -0.4
117,048 + +0.4
117,132 + -0.7
117,170 - -1.4
117,215 + -0.6
119,273 + +0.4
119,279 + -0.4
119,283 + -0.5
119,425 + +0.2
119,440 - -0.1
119,441 - -2.2
119,448 - +1.0
119,449 - -0.4
119,456 - -0.0
119,462 - +0.8
119,464 + -1.3
119,625 - -0.4

Or see this region's nucleotide sequence