Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6170

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14537 and 14538 are separated by 346 nucleotides14538 and 14539 are separated by 100 nucleotides mRNA_6169: 14537 - K20304 TRAPPC6, TRS33 trafficking protein particle complex subunit 6, at 164,256 to 165,475 14537 mRNA_6170: 14538 - KOG3476 Microtubule-associated protein CRIPT, at 165,822 to 166,606 14538 mRNA_6171: 14539 - SUPERFAMILY--SSF52047, at 166,707 to 169,416 14539

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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165,585 + -0.4
165,788 + -0.5
165,893 + +1.1
165,926 + 14538 mRNA_6170 0.13 +1.5
165,936 + 14538 mRNA_6170 0.15 +1.3
166,064 + 14538 mRNA_6170 0.31 -0.2
166,096 + 14538 mRNA_6170 0.35 +2.0
166,207 - 14538 mRNA_6170 0.49 +1.4
166,361 + 14538 mRNA_6170 0.69 -0.6
166,616 - +0.1
166,624 - -0.2
166,639 + -0.5
166,653 + -0.3
166,655 - -0.3
166,655 - -0.9
166,665 - +1.4
167,119 - 14539 mRNA_6171 0.15 -0.7
167,208 - 14539 mRNA_6171 0.18 -0.7
167,238 + 14539 mRNA_6171 0.20 +0.9
167,258 - 14539 mRNA_6171 0.20 +0.5
167,270 + 14539 mRNA_6171 0.21 -1.0
167,384 - 14539 mRNA_6171 0.25 +0.3
167,411 - 14539 mRNA_6171 0.26 -0.3

Or see this region's nucleotide sequence