Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6172

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14539 and 14540 are separated by 433 nucleotides14540 and 14541 are separated by 369 nucleotides mRNA_6171: 14539 - SUPERFAMILY--SSF52047, at 166,707 to 169,416 14539 mRNA_6172: 14540 - K02685 PRI2 DNA primase large subunit, at 169,850 to 171,909 14540 mRNA_6173: 14541 - K00698 CHS1 chitin synthase, at 172,279 to 176,176 14541

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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168,946 - 14539 mRNA_6171 0.83 +0.3
169,580 - +2.1
169,583 - +0.3
169,594 + +0.2
169,756 + +0.2
169,888 - +0.8
171,959 - -0.4
171,980 - +0.8
171,984 + -0.1
171,985 + +0.3
171,995 + +1.4
172,005 + +0.3
172,157 + +0.2
172,166 + -0.2
172,237 + -0.2
172,289 + +1.1
172,293 - -1.4
172,426 + +0.9
172,637 - +0.7
172,638 + -0.4
172,714 - 14541 mRNA_6173 0.11 -0.6
172,896 + 14541 mRNA_6173 0.16 +1.2

Or see this region's nucleotide sequence