Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6177

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14544 and 14545 are separated by 379 nucleotides14545 and 14546 are separated by 993 nucleotides mRNA_6176: 14544 - K03000 RPA12, ZNRD1 DNA-directed RNA polymerase I subunit RPA12, at 182,326 to 182,954 14544 mRNA_6177: 14545 - K00868 pdxK, pdxY pyridoxine kinase, at 183,334 to 184,793 14545 mRNA_6178: 14546 - K17623 HDHD1 pseudouridine 5'-phosphatase, at 185,787 to 186,902 14546

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
182,958 - +1.9
182,973 + +0.9
183,109 - -0.4
183,124 - -1.3
183,126 + +1.9
183,255 - +1.1
183,258 - -0.9
183,267 + +0.5
183,269 - +0.4
183,270 - -0.7
183,280 - -0.5
183,397 - +0.5
183,410 + +0.7
183,421 - +2.5
183,551 - 14545 mRNA_6177 0.15 +1.1
183,560 + 14545 mRNA_6177 0.15 +0.3
183,572 - 14545 mRNA_6177 0.16 +0.4
183,572 - 14545 mRNA_6177 0.16 -0.4
183,588 + 14545 mRNA_6177 0.17 +0.2
183,734 - 14545 mRNA_6177 0.27 -0.2
183,877 + 14545 mRNA_6177 0.37 +0.8
184,020 + 14545 mRNA_6177 0.47 -0.2
184,034 - 14545 mRNA_6177 0.48 +0.6
184,035 + 14545 mRNA_6177 0.48 +0.7
184,062 - 14545 mRNA_6177 0.50 -0.1
184,338 - 14545 mRNA_6177 0.69 +1.4
184,464 + 14545 mRNA_6177 0.77 +0.8
184,627 + 14545 mRNA_6177 0.89 -0.5
184,734 + +0.2
184,743 - -1.0
185,147 - +0.8
185,196 + -0.5
185,324 - -0.2
185,640 + -0.3

Or see this region's nucleotide sequence