Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6189

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14555 and 14556 are separated by 172 nucleotides14556 and 14557 are separated by 209 nucleotides14557 and 14558 are separated by 558 nucleotides mRNA_6187: 14555 - BLAST Cytoplasmic dynein 1 intermediate chain 1 [Wallem..., at 208,221 to 211,423 14555 mRNA_6188: 14556 - Hypothetical Protein, at 211,596 to 212,147 14556 mRNA_6189: 14557 - ProSiteProfiles-Tyrosine specific protein phosphatases family profile.-PS50056,SUPERFAMILY--SSF52799, at 212,357 to 214,481 14557 mRNA_6190: 14558 - HMMPfam-Permease for cytosine/purines, uracil, thiamine, allantoin-PF02133,PIRSF--PIRSF002744, at 215,040 to 217,246 14558

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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211,465 - +0.8
211,474 + -0.0
211,498 + -0.4
211,756 + 14556 mRNA_6188 0.29 -0.8
211,782 - 14556 mRNA_6188 0.34 -0.3
211,828 + 14556 mRNA_6188 0.42 +1.0
211,945 - 14556 mRNA_6188 0.63 +0.3
211,959 + 14556 mRNA_6188 0.66 -0.5
212,014 + 14556 mRNA_6188 0.76 -0.8
212,029 + 14556 mRNA_6188 0.78 +2.1
212,807 + 14557 mRNA_6189 0.21 -0.6
213,114 - 14557 mRNA_6189 0.36 +0.1
213,382 + 14557 mRNA_6189 0.48 +0.1
213,585 + 14557 mRNA_6189 0.58 -0.4
213,993 + 14557 mRNA_6189 0.77 +0.3
213,993 + 14557 mRNA_6189 0.77 +0.1
214,017 + 14557 mRNA_6189 0.78 +0.4
214,103 + 14557 mRNA_6189 0.82 +0.6
214,568 + -0.9
214,607 + +0.3
214,702 - -0.5
214,719 + +0.4
214,726 - -0.0
214,733 + +1.6
214,889 - +2.2
214,906 - +0.1
215,201 + +1.5

Or see this region's nucleotide sequence