Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6217

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14584 and 14585 are separated by 329 nucleotides14585 and 14586 are separated by 705 nucleotides mRNA_6216: 14584 - K03120 TBP, tbp transcription initiation factor TFIID TATA-box-binding protein, at 274,096 to 275,401 14584 mRNA_6217: 14585 - K17362 ACOT13 acyl-coenzyme A thioesterase 13, at 275,731 to 276,667 14585 mRNA_6218: 14586 - K03687 GRPE molecular chaperone GrpE, at 277,373 to 277,948 14586

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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275,419 - -0.7
275,558 + -0.8
275,558 + +0.6
275,559 - +1.2
275,575 + +1.1
275,576 - +1.0
275,576 - -0.6
275,581 - +0.3
275,585 + +1.9
275,591 - +0.9
275,592 + -0.0
275,593 + -0.9
275,596 + +2.3
275,609 + +0.3
275,732 - -0.3
276,001 - 14585 mRNA_6217 0.29 -0.8
276,025 - 14585 mRNA_6217 0.31 -0.3
276,144 - 14585 mRNA_6217 0.44 -0.2
276,153 - 14585 mRNA_6217 0.45 +1.1
276,584 + -0.1
276,592 - +0.7
276,595 - +0.1
276,904 - +0.9
277,031 + -0.8
277,171 - +1.1
277,194 - +0.2
277,332 - -0.5

Or see this region's nucleotide sequence