Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6256

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14623 and 14624 are separated by 547 nucleotides14624 and 14625 are separated by 257 nucleotides mRNA_6255: 14623 - K01452 E3.5.1.41 chitin deacetylase, at 365,616 to 367,386 14623 mRNA_6256: 14624 - Hypothetical Protein, at 367,934 to 368,444 14624 mRNA_6257: 14625 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 368,702 to 371,060 14625

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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367,278 + +0.7
367,299 - +0.7
367,567 - -0.2
367,573 + +1.4
367,579 - -0.9
367,709 + -0.8
367,723 - -1.0
367,727 - -0.6
367,730 - +1.3
367,741 - +1.2
367,742 - -0.1
367,864 + +0.1
367,879 - -0.0
367,893 + +0.2
367,910 + -0.2
368,071 + 14624 mRNA_6256 0.27 +0.4
368,201 - 14624 mRNA_6256 0.52 +1.3
368,287 - 14624 mRNA_6256 0.69 -0.5
368,329 - 14624 mRNA_6256 0.77 -0.4
368,360 + 14624 mRNA_6256 0.83 -0.1
368,505 - -0.6
368,510 + +0.9
368,608 - -0.8
368,655 + +0.3
368,951 - 14625 mRNA_6257 0.11 +0.0
369,082 + 14625 mRNA_6257 0.16 +0.4
369,241 + 14625 mRNA_6257 0.23 +0.4

Or see this region's nucleotide sequence