Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6303

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14670 and 14671 are separated by 257 nucleotides14671 and 14672 are separated by 314 nucleotides mRNA_6302: 14670 - K12562 AMPH amphiphysin, at 478,198 to 480,170 14670 mRNA_6303: 14671 - HMMPfam-Uncharacterised protein family UPF0052-PF01933,SUPERFAMILY--SSF142338, at 480,428 to 482,328 14671 mRNA_6304: 14672 - Hypothetical Protein, at 482,643 to 484,084 14672

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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479,496 + 14670 mRNA_6302 0.66 +1.2
479,514 + 14670 mRNA_6302 0.67 +2.2
479,626 - 14670 mRNA_6302 0.72 -0.2
480,069 - -0.4
480,071 - +0.6
480,210 + +3.0
480,230 - +0.9
480,249 + -1.4
480,255 + +1.6
480,395 + +0.1
480,676 - 14671 mRNA_6303 0.13 -1.1
480,676 - 14671 mRNA_6303 0.13 -0.6
480,682 + 14671 mRNA_6303 0.13 -0.2
480,691 - 14671 mRNA_6303 0.14 +1.0
480,787 - 14671 mRNA_6303 0.19 -0.2
481,538 - 14671 mRNA_6303 0.58 +0.7
481,551 + 14671 mRNA_6303 0.59 +1.9
481,855 - 14671 mRNA_6303 0.75 -2.1
482,110 - 14671 mRNA_6303 0.88 -0.8
482,253 - +0.4
482,386 - +0.3
482,428 - -0.3
482,431 + -0.7
482,431 + -0.5
482,451 - -0.2
482,732 + +1.0
482,753 + -0.9
483,027 + 14672 mRNA_6304 0.27 +0.2
483,211 - 14672 mRNA_6304 0.39 +0.2
483,288 - 14672 mRNA_6304 0.45 +2.6
483,309 + 14672 mRNA_6304 0.46 +1.0

Or see this region's nucleotide sequence