Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6305

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_6305: 14673 - HMMPfam-FAM72 protein-PF14976,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028, at 485,457 to 486,370 14673

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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484,457 + -0.3
484,489 - +1.0
484,504 - +3.1
484,505 + -0.2
484,520 + +0.6
484,523 + +1.2
484,629 - -0.6
484,650 - -0.3
484,660 + +1.1
484,660 - -0.2
484,666 - +1.3
484,673 - -0.3
484,711 + +0.5
484,724 + +1.1
484,756 + +3.0
484,758 + +0.4
484,758 + -0.4
484,773 - -1.3
484,773 - +0.4
484,774 + +1.1
484,781 + +0.4
484,792 - +0.2
484,793 - -0.1
484,868 + -0.0
484,882 + -0.9
485,372 - +1.4
485,931 - 14673 mRNA_6305 0.52 -0.3
486,122 + 14673 mRNA_6305 0.73 -1.7
486,333 - -1.4
486,381 + +0.6
486,423 - +0.5
486,426 - +0.5
486,564 - +0.1
486,641 + -1.1
486,657 - +2.8
486,779 - +0.5
486,782 - +0.2
486,812 + +1.6
486,957 + +0.8
486,962 - +0.5
486,963 + -1.0
486,980 - +0.9
486,981 + +0.6
487,111 + +0.5
487,247 - -0.3

Or see this region's nucleotide sequence