Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6334

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14701 and 14702 are separated by 292 nucleotides14702 and 14703 are separated by 489 nucleotides mRNA_6333: 14701 - K08852 ERN1 serine/threonine-protein kinase/endoribonuclease IRE1, at 569,100 to 573,400 14701 mRNA_6334: 14702 - Hypothetical Protein, at 573,693 to 575,624 14702 mRNA_6335: 14703 - BLAST chloride channel protein 3 [Pseudozyma hubeiensis..., at 576,114 to 577,521 14703

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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573,380 - +2.6
574,114 + 14702 mRNA_6334 0.22 -1.3
574,387 + 14702 mRNA_6334 0.36 -0.7
574,681 - 14702 mRNA_6334 0.51 -0.9
575,021 + 14702 mRNA_6334 0.69 +1.2
575,144 - 14702 mRNA_6334 0.75 -2.4
575,255 + 14702 mRNA_6334 0.81 +2.0
575,390 + 14702 mRNA_6334 0.88 +0.3
575,565 - +0.3
575,679 - -0.1
575,708 - +1.9
575,858 + +0.5
575,991 - -1.7
575,997 - -0.7
576,262 - 14703 mRNA_6335 0.11 -1.4
576,595 - 14703 mRNA_6335 0.34 +0.7

Or see this region's nucleotide sequence