Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6347

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14714 and 14715 are separated by 576 nucleotides14715 and 14716 are separated by 78 nucleotides mRNA_6346: 14714 - HMMPfam-Protein of unknown function (DUF938)-PF06080,SUPERFAMILY--SSF53335, at 599,677 to 600,627 14714 mRNA_6347: 14715 - Hypothetical Protein, at 601,204 to 601,756 14715 mRNA_6348: 14716 - K11373 ELP1, IKI3, IKBKAP elongator complex protein 1, at 601,835 to 607,122 14716

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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600,514 + 14714 mRNA_6346 0.88 -0.4
600,514 + 14714 mRNA_6346 0.88 +0.3
600,618 - -0.3
601,040 + -0.4
601,193 + +0.7
601,341 + 14715 mRNA_6347 0.25 +1.7
601,464 - 14715 mRNA_6347 0.47 -1.1
601,481 + 14715 mRNA_6347 0.50 +0.2
601,487 - 14715 mRNA_6347 0.51 +0.3
601,649 - 14715 mRNA_6347 0.80 -1.1
601,747 - -0.8
601,761 - +0.2
601,801 + -0.3
601,938 - +0.1
602,339 - -0.3

Or see this region's nucleotide sequence