Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6371

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14738 and 14739 are separated by 454 nucleotides14739 and 14740 are separated by 314 nucleotides mRNA_6370: 14738 - K15692 RNF13, RZF E3 ubiquitin-protein ligase RNF13, at 655,960 to 658,637 14738 mRNA_6371: 14739 - HMMPfam-SET domain-PF00856,ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 659,092 to 660,021 14739 mRNA_6372: 14740 - BLAST similar to DNA repair protein Dds20/Mei5 [Botrytis ci..., at 660,336 to 661,808 14740

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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658,575 - -0.3
658,598 + +0.1
658,603 + +0.5
658,723 - +1.5
658,728 + -0.1
658,872 - +0.1
658,888 + +0.7
658,889 + +0.1
658,897 - -0.5
658,898 - +1.6
658,900 + -2.5
658,907 - -0.1
658,914 + -0.9
658,915 - -0.2
658,916 + -0.2
658,921 + -0.1
658,930 + +0.0
658,950 - -0.8
659,031 - +0.2
659,044 - -0.6
659,187 + 14739 mRNA_6371 0.10 +0.3
659,346 - 14739 mRNA_6371 0.27 -0.2
659,769 + 14739 mRNA_6371 0.73 +1.5
659,797 + 14739 mRNA_6371 0.76 +1.4
659,951 - +0.7
659,952 + -0.3
660,222 - +1.8
660,227 + +1.3
660,227 + -2.8

Or see this region's nucleotide sequence