Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6417

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14784 and 14785 are separated by 609 nucleotides14785 and 14786 are separated by 267 nucleotides mRNA_6416: 14784 - Hypothetical Protein, at 757,894 to 758,331 14784 mRNA_6417: 14785 - Hypothetical Protein, at 758,941 to 760,073 14785 mRNA_6418: 14786 - K02127 ATPeF0B, ATP5F1, ATP4 F-type H+-transporting ATPase subunit b, at 760,341 to 761,286 14786

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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757,974 + 14784 mRNA_6416 0.18 -0.8
758,117 + 14784 mRNA_6416 0.51 +1.9
758,270 + 14784 mRNA_6416 0.86 -0.4
758,575 + -0.6
758,586 - +0.3
758,591 - -0.4
758,605 + -0.1
758,605 + -1.1
758,698 - -0.0
758,704 - +1.4
758,891 + -0.0
759,121 + 14785 mRNA_6417 0.16 +0.2
759,141 - 14785 mRNA_6417 0.18 +1.0
759,310 - 14785 mRNA_6417 0.33 +0.5
759,381 + 14785 mRNA_6417 0.39 +0.7
759,568 - 14785 mRNA_6417 0.55 -1.2
759,866 - 14785 mRNA_6417 0.82 -1.3
759,875 - 14785 mRNA_6417 0.82 -1.0
759,998 - +0.3
760,187 - -0.0
760,275 - +1.1
760,293 - -0.7
760,295 - +0.7
760,296 + -0.2
760,297 - +0.1
760,307 + -1.2
760,307 + +0.5
760,308 - +0.5
760,333 + +0.8

Or see this region's nucleotide sequence