Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6427

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14794 and 14795 are separated by 106 nucleotides14795 and 14796 are separated by 854 nucleotides mRNA_6426: 14794 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 770,724 to 773,097 14794 mRNA_6427: 14795 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 773,204 to 778,326 14795 mRNA_6428: 14796 - KOG2208 Vigilin, at 779,181 to 783,068 14796

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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773,185 + +1.5
773,304 - -0.7
773,440 - +0.4
773,460 + -0.6
773,547 - +1.1
774,377 - 14795 mRNA_6427 0.23 -0.0
774,483 - 14795 mRNA_6427 0.25 +1.7
774,604 + 14795 mRNA_6427 0.27 +0.7
774,616 - 14795 mRNA_6427 0.28 -0.7
774,660 + 14795 mRNA_6427 0.28 -1.0
774,663 - 14795 mRNA_6427 0.28 +0.6
775,347 - 14795 mRNA_6427 0.42 -1.1
775,821 + 14795 mRNA_6427 0.51 +1.2
776,386 + 14795 mRNA_6427 0.62 +0.5
776,392 + 14795 mRNA_6427 0.62 -0.5
776,477 + 14795 mRNA_6427 0.64 +0.4
776,491 + 14795 mRNA_6427 0.64 -0.6
776,795 + 14795 mRNA_6427 0.70 +1.1
776,935 + 14795 mRNA_6427 0.73 +0.6
776,983 + 14795 mRNA_6427 0.74 +1.3
777,292 + 14795 mRNA_6427 0.80 +0.1
777,298 - 14795 mRNA_6427 0.80 +0.3
777,520 + 14795 mRNA_6427 0.84 +0.8
777,574 + 14795 mRNA_6427 0.85 +1.0
777,790 + 14795 mRNA_6427 0.90 +1.0
777,834 + +1.0
778,240 + -0.2
778,263 + -1.8
778,290 + -0.1
778,647 - +0.9
778,742 + +0.6
778,785 + +0.2
778,861 + +1.6
778,883 - -0.8
778,883 - +0.4
778,909 - -0.7
778,913 + +0.9
779,053 - -0.1

Or see this region's nucleotide sequence