Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6445

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14812 and 14813 are separated by 805 nucleotides14813 and 14814 are separated by 146 nucleotides mRNA_6444: 14812 - Hypothetical Protein, at 808,406 to 809,831 14812 mRNA_6445: 14813 - KOG2896 UV radiation resistance associated protein, at 810,637 to 814,255 14813 mRNA_6446: 14814 - Hypothetical Protein, at 814,402 to 816,229 14814

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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809,998 - -0.8
810,031 - +0.2
810,202 + -0.5
810,226 - +0.2
810,488 - -1.7
810,541 - +0.4
810,889 - -0.2
810,934 + -0.7
810,989 - -0.0
811,032 - 14813 mRNA_6445 0.11 +1.8
811,040 + 14813 mRNA_6445 0.11 +1.2
811,074 - 14813 mRNA_6445 0.12 +0.5
811,090 + 14813 mRNA_6445 0.13 -0.4
811,238 + 14813 mRNA_6445 0.17 +0.4
811,239 - 14813 mRNA_6445 0.17 +0.2
811,388 + 14813 mRNA_6445 0.21 -0.5
811,525 + 14813 mRNA_6445 0.25 -1.4
811,609 + 14813 mRNA_6445 0.27 +0.6
811,722 - 14813 mRNA_6445 0.30 -1.0
811,878 + 14813 mRNA_6445 0.34 -0.1
811,921 - 14813 mRNA_6445 0.35 -0.6
812,121 - 14813 mRNA_6445 0.41 +0.2
812,124 - 14813 mRNA_6445 0.41 +0.2
812,133 - 14813 mRNA_6445 0.41 -2.1
812,142 + 14813 mRNA_6445 0.42 +0.0
812,142 + 14813 mRNA_6445 0.42 +1.1
812,563 - 14813 mRNA_6445 0.53 -0.5
812,625 - 14813 mRNA_6445 0.55 +2.2
812,704 - 14813 mRNA_6445 0.57 +0.2
812,740 + 14813 mRNA_6445 0.58 -0.9
812,869 + 14813 mRNA_6445 0.62 -0.1
813,001 - 14813 mRNA_6445 0.65 +0.3
813,327 - 14813 mRNA_6445 0.74 +0.7
813,631 + 14813 mRNA_6445 0.83 -0.2
813,643 + 14813 mRNA_6445 0.83 +0.8
813,655 - 14813 mRNA_6445 0.83 +0.6
813,664 - 14813 mRNA_6445 0.84 +0.2
813,810 - 14813 mRNA_6445 0.88 -0.3
813,890 + 14813 mRNA_6445 0.90 +0.1
813,922 + +1.0
813,929 + +0.2
813,989 - +0.4
814,010 + +0.6
814,041 - -0.5
814,055 - +0.2
814,072 + +1.3
814,076 - -0.6
814,196 - +1.6
814,209 + +2.5
814,211 + +1.7
814,222 + +0.4
814,317 - +2.7
814,335 + -0.4
814,357 + +1.1
814,364 - +0.4
814,487 - -0.3
814,500 - +1.1
814,717 - 14814 mRNA_6446 0.17 +0.2
814,718 + 14814 mRNA_6446 0.17 +0.1
814,742 - 14814 mRNA_6446 0.19 +0.4
814,796 + 14814 mRNA_6446 0.22 -0.7
814,881 - 14814 mRNA_6446 0.26 +0.9
814,915 - 14814 mRNA_6446 0.28 -0.4
814,920 + 14814 mRNA_6446 0.28 -0.6
814,977 - 14814 mRNA_6446 0.31 +0.1
815,172 - 14814 mRNA_6446 0.42 +0.2
815,247 + 14814 mRNA_6446 0.46 +1.9

Or see this region's nucleotide sequence