Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6476

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14843 and 14844 are separated by 227 nucleotides14844 and 14845 are separated by 723 nucleotides mRNA_6475: 14843 - KOG3442 Uncharacterized conserved protein, at 873,206 to 873,968 14843 mRNA_6476: 14844 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 874,196 to 881,716 14844 mRNA_6477: 14845 - HMMPfam-Catalytic LigB subunit of aromatic ring-opening dioxygenase-PF02900,SUPERFAMILY--SSF53213, at 882,440 to 883,452 14845

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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874,051 - +1.3
874,061 + +0.9
874,082 + +0.6
874,278 + +0.1
874,370 - +0.6
874,662 - +0.7
875,063 + 14844 mRNA_6476 0.12 +1.1
875,254 + 14844 mRNA_6476 0.14 +2.2
875,545 + 14844 mRNA_6476 0.18 +0.1
875,677 - 14844 mRNA_6476 0.20 -0.2
875,808 + 14844 mRNA_6476 0.21 +1.9
875,862 + 14844 mRNA_6476 0.22 -0.2
876,275 + 14844 mRNA_6476 0.28 +0.4
876,275 - 14844 mRNA_6476 0.28 +0.8
876,405 + 14844 mRNA_6476 0.29 -1.2
876,453 - 14844 mRNA_6476 0.30 +1.1
876,458 - 14844 mRNA_6476 0.30 +0.3
876,458 + 14844 mRNA_6476 0.30 +0.1
876,866 + 14844 mRNA_6476 0.36 +1.1
877,330 - 14844 mRNA_6476 0.42 -0.5
877,415 + 14844 mRNA_6476 0.43 +0.7
877,437 - 14844 mRNA_6476 0.43 +0.5
877,466 - 14844 mRNA_6476 0.43 +2.0
877,590 - 14844 mRNA_6476 0.45 -0.2
877,762 + 14844 mRNA_6476 0.47 +0.2
877,946 - 14844 mRNA_6476 0.50 +0.2
878,130 + 14844 mRNA_6476 0.52 -0.2
878,279 + 14844 mRNA_6476 0.54 +0.3
878,403 + 14844 mRNA_6476 0.56 -0.2
878,476 + 14844 mRNA_6476 0.57 +0.2
878,538 + 14844 mRNA_6476 0.58 -1.6
878,892 + 14844 mRNA_6476 0.62 -0.1
879,471 - 14844 mRNA_6476 0.70 +0.5
880,199 + 14844 mRNA_6476 0.80 +0.8
880,218 - 14844 mRNA_6476 0.80 +0.7
880,484 - 14844 mRNA_6476 0.84 -0.2
881,037 + +0.2
881,188 - -0.7
881,330 + -0.5
881,348 - -0.1
881,349 - +1.1
881,633 + +2.6
881,795 - +0.1
881,906 + -0.3
881,913 - +0.9
881,915 + +0.8
881,916 + +1.2
881,919 + +0.2
881,930 - -0.1
881,942 + -0.5
881,948 + +2.8
881,955 - +0.5
881,958 + -0.2
882,020 - +0.5
882,106 - +0.6
882,111 - -0.6
882,131 + -0.1
882,133 - +0.3
882,173 + +0.5
882,215 + +0.2
882,218 - +1.0
882,224 - +0.3
882,225 - +0.7
882,225 - +1.1
882,227 + +1.4
882,243 + -1.1
882,247 + +0.7
882,282 + -1.1
882,381 + +0.8
882,386 + +0.9
882,529 + -0.5
882,536 - +2.4

Or see this region's nucleotide sequence