Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6481

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14848 and 14849 are separated by 320 nucleotides14849 and 14850 are separated by 192 nucleotides mRNA_6480: 14848 - Hypothetical Protein, at 891,101 to 891,716 14848 mRNA_6481: 14849 - K02201 E2.7.7.3B pantetheine-phosphate adenylyltransferase, at 892,037 to 893,331 14849 mRNA_6482: 14850 - Hypothetical Protein, at 893,524 to 894,299 14850

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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891,074 + +0.1
891,083 - -0.5
891,366 - 14848 mRNA_6480 0.43 -0.7
891,935 + -0.1
891,939 - +0.7
891,951 - +1.7
891,956 - -0.5
891,976 - +0.7
891,997 + +0.6
893,995 - 14850 mRNA_6482 0.61 +0.6
894,039 - 14850 mRNA_6482 0.66 +0.4
894,176 + 14850 mRNA_6482 0.84 -0.4
894,306 + +0.6
894,311 - -0.0

Or see this region's nucleotide sequence