Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6501

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14868 and 14869 are separated by 238 nucleotides14869 and 14870 are separated by 316 nucleotides mRNA_6500: 14868 - K14416 HBS1 elongation factor 1 alpha-like protein, at 933,622 to 935,186 14868 mRNA_6501: 14869 - K06902 UMF1 MFS transporter, UMF1 family, at 935,425 to 937,523 14869 mRNA_6502: 14870 - K02971 RP-S21e, RPS21 small subunit ribosomal protein S21e, at 937,840 to 938,370 14870

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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935,300 + +0.9
935,855 - 14869 mRNA_6501 0.20 -0.2
935,988 - 14869 mRNA_6501 0.27 -0.1
936,123 - 14869 mRNA_6501 0.33 -1.3
936,319 + 14869 mRNA_6501 0.43 +0.5
936,747 - 14869 mRNA_6501 0.63 -0.3
936,882 - 14869 mRNA_6501 0.69 +0.0
936,883 + 14869 mRNA_6501 0.69 -0.2
937,022 - 14869 mRNA_6501 0.76 +0.9
937,335 + -1.3
937,339 - -0.1
937,442 - +0.8
937,460 + -0.5
937,465 + -0.6
937,479 + +0.9
937,787 + +0.6

Or see this region's nucleotide sequence