Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6513

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14881 and 14882 are separated by 968 nucleotides mRNA_6513: 14881 - HMMPfam-Glycosyl transferase family 90-PF05686,SMART-Putative lipopolysaccharide-modifying enzyme.-SM00672, at 964,907 to 967,353 14881 mRNA_6514: 14882 - KOG1441 Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter, at 968,322 to 969,938 14882

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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963,990 + +1.5
964,433 - -0.9
964,512 - +1.4
964,525 - -0.2
964,759 + +0.8
964,898 - -0.4
964,944 + +0.6
965,232 + 14881 mRNA_6513 0.13 +2.5
965,346 + 14881 mRNA_6513 0.18 +0.1
965,453 - 14881 mRNA_6513 0.22 +0.5
965,495 - 14881 mRNA_6513 0.24 +0.5
965,503 - 14881 mRNA_6513 0.24 +0.3
965,795 - 14881 mRNA_6513 0.36 +1.0
965,796 + 14881 mRNA_6513 0.36 +1.4
966,028 + 14881 mRNA_6513 0.46 -0.5
966,469 - 14881 mRNA_6513 0.64 +0.8
966,511 - 14881 mRNA_6513 0.66 +1.3
966,654 - 14881 mRNA_6513 0.71 +0.0
966,661 - 14881 mRNA_6513 0.72 +0.8
966,801 - 14881 mRNA_6513 0.77 +0.3
967,085 + 14881 mRNA_6513 0.89 +0.1
967,092 - 14881 mRNA_6513 0.89 +0.6
967,220 + +1.6
967,224 - +1.2
967,232 - +0.8
967,252 - +0.9
967,376 - -0.3
967,386 + -0.1
967,391 - -0.1
967,400 - -0.2
967,415 - +0.9
967,534 - -0.0
967,544 - +0.6
967,544 - +0.0
967,546 - +1.6
967,558 - +1.2
967,569 - -1.4
967,602 + +1.0
967,700 + +1.3
967,705 + +0.5
967,712 - +1.1
967,839 + +2.2
967,979 - +0.1
968,019 + +0.5
968,125 + -0.4
968,270 - -0.1
968,278 - +0.3
968,280 + +1.4

Or see this region's nucleotide sequence