Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6523

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14891 and 14892 are separated by 308 nucleotides mRNA_6523: 14891 - K14567 UTP14 U3 small nucleolar RNA-associated protein 14, at 995,570 to 999,222 14891 mRNA_6524: 14892 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 999,531 to 1,001,982 14892

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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994,617 + +0.6
994,618 - +1.4
994,626 - -0.6
994,629 - +0.8
994,631 - +1.9
994,644 - -2.0
994,651 + +2.0
994,657 + +1.3
994,665 + +1.8
994,728 - +0.6
994,733 + +1.0
994,738 - +0.4
994,874 - -0.6
994,892 + +0.4
994,934 + -0.9
994,952 + -0.1
994,955 - -0.3
994,959 - -1.5
994,969 + +0.2
994,975 + +0.8
994,976 - +0.4
994,976 + -0.8
994,976 + -0.5
995,147 + -0.7
995,160 - +2.3
995,272 + +0.4
995,275 - +1.2
995,281 - +1.8
995,289 + +0.9
995,293 + +0.3
995,311 - +1.2
995,324 + +1.0
995,330 + +0.8
995,347 + +0.0
995,418 - -0.4
995,439 + -0.2
995,451 + -0.4
998,415 + 14891 mRNA_6523 0.78 +0.3
999,329 + +0.1
999,421 - -1.1
999,424 - -0.5
999,769 - +0.3
999,869 + 14892 mRNA_6524 0.14 -0.1
1,000,161 + 14892 mRNA_6524 0.26 +1.9

Or see this region's nucleotide sequence