Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6537

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14904 and 14905 are separated by 191 nucleotides14905 and 14906 are separated by 329 nucleotides14906 and 14907 are separated by 316 nucleotides mRNA_6536: 14904 - HMMPfam-Protein of unknown function (DUF837)-PF05769, at 1,023,887 to 1,025,304 14904 mRNA_6537: 14905 - Hypothetical Protein, at 1,025,496 to 1,027,566 14905 mRNA_6538: 14906 - BLAST AGC/AKT protein kinase [Microbotryum lychnidis-dioica..., at 1,027,896 to 1,028,222 14906 mRNA_6539: 14907 - K19800 SCH9 serine/threonine protein kinase SCH9, at 1,028,539 to 1,031,379 14907

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,024,705 - 14904 mRNA_6536 0.58 -0.4
1,024,900 + 14904 mRNA_6536 0.71 -0.0
1,024,954 + 14904 mRNA_6536 0.75 +0.5
1,025,021 + 14904 mRNA_6536 0.80 +1.2
1,025,024 - 14904 mRNA_6536 0.80 -1.7
1,025,290 + +0.5
1,025,316 - +0.0
1,025,417 + +1.3
1,025,418 - -0.1
1,025,497 - +2.0
1,025,507 - -0.0
1,025,509 - -0.2
1,025,518 - +0.2
1,025,531 - -0.1
1,025,599 - -0.6
1,026,314 + 14905 mRNA_6537 0.39 -0.3
1,026,348 - 14905 mRNA_6537 0.41 +1.0
1,026,609 + 14905 mRNA_6537 0.54 -0.6
1,026,687 - 14905 mRNA_6537 0.58 -0.5
1,027,081 - 14905 mRNA_6537 0.77 +1.3
1,027,091 + 14905 mRNA_6537 0.77 -0.0
1,027,094 - 14905 mRNA_6537 0.77 +0.4
1,027,107 - 14905 mRNA_6537 0.78 +0.4
1,027,212 + 14905 mRNA_6537 0.83 +1.3
1,027,385 - +0.7
1,027,394 - -0.1
1,027,412 - +1.3
1,027,520 + -0.3
1,027,536 - -0.3
1,027,665 + -0.3
1,027,688 - -0.3
1,027,690 + -0.5
1,027,690 - +0.2
1,027,690 + -0.4
1,027,697 + +0.6
1,027,710 + +1.8
1,027,710 + -0.4
1,027,842 - -0.5
1,027,850 + -1.2
1,027,855 + +0.3
1,027,860 - -0.9
1,028,000 + 14906 mRNA_6538 0.32 -0.7
1,028,008 - 14906 mRNA_6538 0.34 +2.2
1,028,009 + 14906 mRNA_6538 0.35 +0.0
1,028,031 + 14906 mRNA_6538 0.41 -0.4
1,028,033 + 14906 mRNA_6538 0.42 -0.3
1,028,140 + 14906 mRNA_6538 0.75 -0.1
1,028,148 + 14906 mRNA_6538 0.77 +0.1
1,028,154 + 14906 mRNA_6538 0.79 +0.1
1,028,159 - 14906 mRNA_6538 0.80 +0.4
1,028,179 - 14906 mRNA_6538 0.87 -0.6
1,028,297 - -0.2
1,028,300 - -0.2
1,028,307 + -0.1
1,028,311 + +0.4
1,028,312 + -0.0
1,028,313 + +0.9
1,028,486 + +1.0

Or see this region's nucleotide sequence