Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6551

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14919 and 14920 are separated by 440 nucleotides mRNA_6551: 14919 - ProSiteProfiles-Zinc finger CCHC-type profile.-PS50158,SMART-zinc finger-SM00343,SUPERFAMILY--SSF57756, at 1,073,941 to 1,075,191 14919 mRNA_6552: 14920 - K03127 TAF13 transcription initiation factor TFIID subunit 13, at 1,075,632 to 1,076,180 14920

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,073,169 + +2.6
1,073,171 - +0.3
1,074,376 + 14919 mRNA_6551 0.35 -0.7
1,074,933 - 14919 mRNA_6551 0.79 -0.6
1,075,056 + 14919 mRNA_6551 0.89 -1.1
1,075,179 - -0.5
1,075,205 - -0.3
1,075,247 + -0.5
1,075,368 - -1.1
1,075,376 + +1.9
1,075,377 - +0.7
1,075,384 - -0.7
1,075,387 - -0.2
1,075,388 - -0.2
1,075,392 - -0.1
1,075,392 - +0.1
1,075,393 + +1.6
1,075,401 + -0.0
1,075,902 - 14920 mRNA_6552 0.49 -0.0
1,075,974 + 14920 mRNA_6552 0.62 +0.2
1,075,993 + 14920 mRNA_6552 0.66 +0.3
1,076,119 + 14920 mRNA_6552 0.89 +1.3
1,076,147 - -0.1

Or see this region's nucleotide sequence