Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6571

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14938 and 14939 are separated by 970 nucleotides14939 and 14940 are separated by 337 nucleotides mRNA_6570: 14938 - K09184 GATAF GATA-binding protein, other eukaryote, at 1,123,067 to 1,127,630 14938 mRNA_6571: 14939 - K11790 DTL, CDT2, DCAF2 denticleless, at 1,128,601 to 1,130,974 14939 mRNA_6572: 14940 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928, at 1,131,312 to 1,136,542 14940

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,127,649 + -0.7
1,127,677 - +1.0
1,127,835 - -0.1
1,127,838 + +0.2
1,127,845 - -0.4
1,127,849 - +0.9
1,127,850 + -0.6
1,127,867 + -0.0
1,127,867 + +0.1
1,127,868 + +0.8
1,127,868 + +0.7
1,127,868 + +0.1
1,127,970 - -0.1
1,127,975 + -0.9
1,127,985 - +0.1
1,128,002 + -0.5
1,128,050 + -0.2
1,128,099 - +0.6
1,128,103 + +1.6
1,128,116 + -0.3
1,128,149 - +0.0
1,128,150 - -0.3
1,128,150 - +0.5
1,128,152 - -1.1
1,128,153 + -0.2
1,128,161 + +1.3
1,128,161 - -1.3
1,128,167 + +2.1
1,128,167 + -0.2
1,128,173 - -0.5
1,128,175 - +0.7
1,128,178 + +1.3
1,128,183 + -0.0
1,128,185 - +0.1
1,128,192 - +2.0
1,128,193 + +0.1
1,128,195 + -0.7
1,128,240 + -0.4
1,128,249 - +1.5
1,128,254 + -0.2
1,128,255 + +0.9
1,128,257 + -2.2
1,128,278 + +0.6
1,128,280 - +0.0
1,128,289 - +1.1
1,128,297 + +2.2
1,128,307 + -0.3
1,128,310 - -0.1
1,128,326 - +0.0
1,128,330 - -0.9
1,128,334 + +0.3
1,128,345 - -2.1
1,128,352 - +2.4
1,128,353 + -0.4
1,128,353 - +0.3
1,128,360 - +2.5
1,128,360 - -1.4
1,128,362 + +0.6
1,128,364 + +1.1
1,128,377 - +1.0
1,128,402 - -0.4
1,128,406 - +0.4
1,128,407 + -0.8
1,128,417 + +0.7
1,128,419 + +1.0
1,128,494 - -0.9
1,128,530 - +1.6
1,128,540 + +0.0
1,128,541 + -0.3
1,128,542 - -0.1
1,128,559 - -0.1
1,128,564 + -0.1
1,128,577 - -0.1
1,128,587 + -0.4
1,128,695 + +0.0
1,128,755 + -3.5
1,128,832 - -0.2
1,129,445 - 14939 mRNA_6571 0.36 +0.9
1,130,340 + 14939 mRNA_6571 0.73 -1.3
1,130,624 - 14939 mRNA_6571 0.85 -0.3
1,130,633 + 14939 mRNA_6571 0.86 +0.7
1,130,914 - +1.0
1,130,915 + -0.5
1,131,051 - +0.0
1,131,062 + +0.9
1,131,075 + -1.3
1,131,080 + +1.5
1,131,083 - +0.3
1,131,204 - -0.5
1,131,223 - +2.9
1,131,237 - +1.4
1,131,260 - +1.4
1,131,281 + +1.2
1,131,515 + -1.3
1,131,596 + +0.4

Or see this region's nucleotide sequence