Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6581

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14948 and 14949 are separated by 392 nucleotides14949 and 14950 are separated by 396 nucleotides mRNA_6580: 14948 - K11098 SNRPF, SMF small nuclear ribonucleoprotein F, at 1,150,029 to 1,150,564 14948 mRNA_6581: 14949 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 1,150,957 to 1,153,150 14949 mRNA_6582: 14950 - K11517 HAO (S)-2-hydroxy-acid oxidase, at 1,153,547 to 1,155,730 14950

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,150,712 - +0.6
1,150,737 + -0.5
1,150,842 - -0.2
1,150,845 + -0.6
1,150,849 + -0.6
1,150,850 + +1.4
1,150,864 - -2.3
1,150,873 - +2.6
1,150,993 - +0.8
1,151,005 + -0.4
1,151,026 - +0.3
1,151,342 + 14949 mRNA_6581 0.18 -0.7
1,152,044 - 14949 mRNA_6581 0.50 +0.4
1,152,195 - 14949 mRNA_6581 0.56 +0.9
1,152,629 + 14949 mRNA_6581 0.76 -0.3
1,153,181 + -0.7
1,153,222 + -0.3
1,153,238 - +0.2
1,153,346 - -0.2
1,153,346 + +1.0
1,153,349 - +2.1
1,153,366 + -0.8
1,153,379 + +0.4
1,153,388 - +0.4
1,153,519 + -0.4
1,153,537 - +0.3
1,153,676 + +1.0
1,154,122 + 14950 mRNA_6582 0.26 +0.7

Or see this region's nucleotide sequence