Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6583

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14950 and 14951 are separated by 241 nucleotides14951 and 14952 are separated by 257 nucleotides mRNA_6582: 14950 - K11517 HAO (S)-2-hydroxy-acid oxidase, at 1,153,547 to 1,155,730 14950 mRNA_6583: 14951 - Hypothetical Protein, at 1,155,972 to 1,156,740 14951 mRNA_6584: 14952 - BLAST conserved fungal protein [Moniliophthora roreri M..., at 1,156,998 to 1,158,923 14952

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,154,993 - 14950 mRNA_6582 0.66 -1.0
1,155,160 - 14950 mRNA_6582 0.74 +0.7
1,155,407 - 14950 mRNA_6582 0.85 +0.4
1,155,745 + -0.6
1,155,758 - -1.2
1,156,061 + 14951 mRNA_6583 0.12 +0.2
1,156,768 - -0.3
1,156,941 + -0.6
1,157,084 + -0.6

Or see this region's nucleotide sequence