Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6676

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15042 and 15043 are separated by 27 nucleotides15043 and 15044 are separated by 126 nucleotides15044 and 15045 are separated by 369 nucleotides mRNA_6674: 15042 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 1,418,030 to 1,419,199 15042 mRNA_6675: 15043 - Hypothetical Protein, at 1,419,227 to 1,419,845 15043 mRNA_6676: 15044 - KOG3138 Predicted N-acetyltransferase, at 1,419,972 to 1,420,806 15044 mRNA_6677: 15045 - Hypothetical Protein, at 1,421,176 to 1,421,967 15045

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,419,219 + +0.1
1,419,340 - 15043 mRNA_6675 0.18 +0.7
1,419,488 - 15043 mRNA_6675 0.42 +0.1
1,419,507 + 15043 mRNA_6675 0.45 -0.5
1,419,527 - 15043 mRNA_6675 0.48 -0.1
1,419,628 + 15043 mRNA_6675 0.65 -0.5
1,419,629 + 15043 mRNA_6675 0.65 +1.7
1,419,636 + 15043 mRNA_6675 0.66 -0.2
1,419,646 + 15043 mRNA_6675 0.68 +0.0
1,419,647 + 15043 mRNA_6675 0.68 +2.0
1,419,648 + 15043 mRNA_6675 0.68 +0.2
1,419,654 - 15043 mRNA_6675 0.69 +1.3
1,419,659 + 15043 mRNA_6675 0.70 -0.2
1,419,670 + 15043 mRNA_6675 0.72 +0.7
1,419,778 - 15043 mRNA_6675 0.89 -0.7
1,419,780 + 15043 mRNA_6675 0.89 +1.0
1,419,811 + +1.1
1,419,811 + -0.4
1,419,827 - -0.1
1,419,880 + -0.1
1,419,938 - +0.0
1,419,950 - +0.2
1,419,975 - -0.7
1,419,976 + -0.4
1,419,991 - +0.1
1,420,118 + 15044 mRNA_6676 0.17 +1.1
1,420,122 + 15044 mRNA_6676 0.18 -0.2
1,420,699 + 15044 mRNA_6676 0.87 -0.5
1,420,750 - -2.8
1,420,760 - +0.2
1,420,809 - +0.2
1,420,813 + -0.3
1,420,849 + +0.0
1,420,870 - -0.8
1,420,893 - +0.1
1,420,893 + +0.8
1,420,912 + +0.9
1,420,964 + -0.1
1,420,966 - +0.4
1,420,977 + -0.7
1,420,999 - +0.3
1,421,000 - -0.2
1,421,006 + -0.2
1,421,007 + +1.5
1,421,011 + -0.4
1,421,015 - +0.7
1,421,020 - +1.5
1,421,023 + -0.2
1,421,024 + -1.3
1,421,032 + +0.6
1,421,038 - -0.9
1,421,174 + -0.2
1,421,185 + +1.8
1,421,189 + -2.6
1,421,207 + +0.1
1,421,294 - 15045 mRNA_6677 0.15 -1.6
1,421,331 - 15045 mRNA_6677 0.20 +0.6
1,421,601 + 15045 mRNA_6677 0.54 -0.2

Or see this region's nucleotide sequence