Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6716

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15083 and 15084 are separated by 265 nucleotides15084 and 15085 are separated by 415 nucleotides mRNA_6715: 15083 - K13989 DERL2_3 Derlin-2/3, at 1,521,694 to 1,522,877 15083 mRNA_6716: 15084 - Hypothetical Protein, at 1,523,143 to 1,524,181 15084 mRNA_6717: 15085 - Hypothetical Protein, at 1,524,597 to 1,524,959 15085

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,522,308 + 15083 mRNA_6715 0.52 +0.4
1,522,479 + 15083 mRNA_6715 0.66 -0.0
1,522,601 - 15083 mRNA_6715 0.77 +0.1
1,522,621 + 15083 mRNA_6715 0.78 -0.1
1,522,647 + 15083 mRNA_6715 0.80 -0.9
1,522,738 + 15083 mRNA_6715 0.88 -0.1
1,522,744 - 15083 mRNA_6715 0.89 +1.5
1,522,771 - +0.8
1,522,772 + -0.3
1,522,870 + +0.7
1,522,872 - -0.2
1,523,003 - -0.3
1,523,010 + +0.4
1,523,010 + +0.5
1,523,019 + -0.1
1,523,020 + +0.1
1,523,042 + -0.0
1,523,066 + +0.1
1,523,075 - -1.4
1,523,077 + +0.6
1,523,347 - 15084 mRNA_6716 0.20 +0.6
1,523,375 - 15084 mRNA_6716 0.22 +0.1
1,523,507 - 15084 mRNA_6716 0.35 +2.6
1,524,244 + -1.6
1,524,320 - +0.1
1,524,338 + +0.6
1,524,406 - +0.1
1,524,986 - +1.7
1,524,986 - -0.3
1,525,010 - -1.6

Or see this region's nucleotide sequence