Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6731

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15099 and 15100 are separated by 503 nucleotides mRNA_6731: 15099 - BLAST putative Ran-binding protein [Rhizoctonia solani 123E], at 15,699 to 18,601 15099 mRNA_6732: 15100 - KOG1530 Rhodanese-related sulfurtransferase, at 19,105 to 19,903 15100

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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14,788 - +0.1
14,802 + +2.8
14,898 - -0.0
14,918 - -0.3
15,094 + +2.1
15,118 - -0.8
15,294 + +0.3
15,324 + +1.0
15,506 - +0.4
15,599 + +0.2
15,752 - +2.3
15,753 + +0.0
15,845 + +1.9
15,845 + +1.5
15,919 + -0.4
16,071 - 15099 mRNA_6731 0.13 -1.1
16,115 + 15099 mRNA_6731 0.14 +0.1
16,119 - 15099 mRNA_6731 0.14 -0.0
16,160 - 15099 mRNA_6731 0.16 +2.8
16,167 + 15099 mRNA_6731 0.16 -0.2
16,339 + 15099 mRNA_6731 0.22 +1.4
16,433 - 15099 mRNA_6731 0.25 -1.3
16,638 - 15099 mRNA_6731 0.32 +2.6
16,656 + 15099 mRNA_6731 0.33 +0.9
16,742 + 15099 mRNA_6731 0.36 +0.3
16,750 - 15099 mRNA_6731 0.36 +0.6
16,750 + 15099 mRNA_6731 0.36 +2.0
16,766 + 15099 mRNA_6731 0.37 +0.3
16,896 + 15099 mRNA_6731 0.41 -0.6
17,013 + 15099 mRNA_6731 0.45 +0.6
17,038 + 15099 mRNA_6731 0.46 +0.4
17,067 + 15099 mRNA_6731 0.47 +1.7
17,162 + 15099 mRNA_6731 0.50 +0.1
17,356 + 15099 mRNA_6731 0.57 +1.4
17,590 + 15099 mRNA_6731 0.65 -0.7
17,661 - 15099 mRNA_6731 0.68 -0.2
17,977 + 15099 mRNA_6731 0.78 -0.8
18,184 + 15099 mRNA_6731 0.86 -0.1
18,552 - +0.5
18,970 - -0.5

Or see this region's nucleotide sequence