Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6749

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15116 and 15117 overlap by 47 nucleotides15117 and 15118 are separated by 238 nucleotides mRNA_6748: 15116 - Hypothetical Protein, at 52,794 to 54,250 15116 mRNA_6749: 15117 - Hypothetical Protein, at 54,204 to 55,988 15117 mRNA_6750: 15118 - SUPERFAMILY--SSF47473, at 56,227 to 57,172 15118

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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53,405 + 15116 mRNA_6748 0.42 -0.1
53,511 - 15116 mRNA_6748 0.49 +0.9
53,538 - 15116 mRNA_6748 0.51 -0.1
53,654 + 15116 mRNA_6748 0.59 -0.2
53,697 - 15116 mRNA_6748 0.62 -0.4
53,769 - 15116 mRNA_6748 0.67 -0.2
53,815 + 15116 mRNA_6748 0.70 +0.2
53,974 + 15116 mRNA_6748 0.81 -0.2
54,061 - 15116 mRNA_6748 0.87 +1.0
54,153 + +0.5
54,245 + -0.8
54,249 + +0.3
54,266 - +0.3
54,269 + +0.8
54,328 - +0.1
54,398 - 15117 mRNA_6749 0.11 -0.1
54,415 + 15117 mRNA_6749 0.12 -0.1
54,420 + 15117 mRNA_6749 0.12 -0.3
54,427 - 15117 mRNA_6749 0.12 -0.1
54,430 + 15117 mRNA_6749 0.13 -0.7
54,636 + 15117 mRNA_6749 0.24 -1.4
54,873 - 15117 mRNA_6749 0.37 -0.4
54,981 - 15117 mRNA_6749 0.44 -0.2
55,030 + 15117 mRNA_6749 0.46 -0.1
55,033 - 15117 mRNA_6749 0.46 -1.9
55,094 - 15117 mRNA_6749 0.50 +1.4
55,135 - 15117 mRNA_6749 0.52 +0.2
55,248 - 15117 mRNA_6749 0.58 +2.3
55,265 + 15117 mRNA_6749 0.59 +0.2
55,366 + 15117 mRNA_6749 0.65 +2.0
55,377 + 15117 mRNA_6749 0.66 +1.3
55,411 - 15117 mRNA_6749 0.68 +0.3
55,418 + 15117 mRNA_6749 0.68 -1.1
55,684 + 15117 mRNA_6749 0.83 -1.2
55,702 + 15117 mRNA_6749 0.84 -0.2
55,734 - 15117 mRNA_6749 0.86 -0.7
55,741 - 15117 mRNA_6749 0.86 -1.2
55,797 + 15117 mRNA_6749 0.89 +0.3
55,847 + +0.9
55,883 + -1.4
55,973 - +0.5
55,979 - +0.9
55,988 - +0.4
55,988 - +1.7
55,993 + -0.2
56,081 + -0.8
56,130 - +0.1
56,133 + +1.6
56,135 - +1.0
56,257 - +2.2
56,312 + +1.7
56,430 + 15118 mRNA_6750 0.21 +0.9
56,442 + 15118 mRNA_6750 0.23 +1.1
56,445 - 15118 mRNA_6750 0.23 -0.3
56,570 - 15118 mRNA_6750 0.36 -0.9
56,576 - 15118 mRNA_6750 0.37 -0.1
56,586 + 15118 mRNA_6750 0.38 +0.6
56,588 + 15118 mRNA_6750 0.38 -0.3
56,589 + 15118 mRNA_6750 0.38 +0.0
56,606 + 15118 mRNA_6750 0.40 +1.2
56,627 + 15118 mRNA_6750 0.42 +1.0
56,713 - 15118 mRNA_6750 0.51 +0.7

Or see this region's nucleotide sequence