Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6752

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15119 and 15120 are separated by 219 nucleotides mRNA_6751: 15119 - K10578 UBE2J1, NCUBE1, UBC6 ubiquitin-conjugating enzyme E2 J1, at 57,250 to 58,945 15119 mRNA_6752: 15120 - Hypothetical Protein, at 59,165 to 59,914 15120

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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58,173 - 15119 mRNA_6751 0.54 +0.1
58,771 + 15119 mRNA_6751 0.90 +1.0
59,132 - +2.7
59,529 + 15120 mRNA_6752 0.49 +0.6
59,542 + 15120 mRNA_6752 0.50 -0.4
59,655 - 15120 mRNA_6752 0.65 +0.7
59,676 + 15120 mRNA_6752 0.68 +1.1
59,792 - 15120 mRNA_6752 0.84 +1.4
59,814 - 15120 mRNA_6752 0.87 +1.2
59,850 - +0.1
59,941 + +0.8
59,947 + +2.1
59,980 + +0.9
60,153 - +1.1
60,231 - +1.9
60,270 + +0.1
60,544 - +0.2
60,545 + -0.4
60,572 + +0.3
60,682 + +0.9
60,805 - +0.5
60,856 - -0.3
60,867 + +0.8

Or see this region's nucleotide sequence