Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6771

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15138 and 15139 are separated by 965 nucleotides15139 and 15140 are separated by 841 nucleotides mRNA_6770: 15138 - K03350 APC3, CDC27 anaphase-promoting complex subunit 3, at 96,842 to 100,028 15138 mRNA_6771: 15139 - Hypothetical Protein, at 100,994 to 101,449 15139 mRNA_6772: 15140 - KOG0202 Ca2+ transporting ATPase, at 102,291 to 102,787 15140

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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100,230 - +1.0
100,244 - -0.5
100,258 - +1.7
100,258 + +1.2
100,265 + +0.2
100,349 - -1.9
100,379 + -0.3
100,389 + -0.4
100,404 + +0.8
100,410 - -0.5
100,430 + +1.3
100,435 + -0.1
100,594 - -0.8
100,603 - +1.1
100,612 - -0.3
100,614 + +0.6
100,625 + -1.3
100,709 - -0.3
100,727 - -1.2
100,782 - -0.9
100,828 - +1.9
100,842 - +0.9
100,850 + +0.3
101,009 - +0.1
101,085 - 15139 mRNA_6771 0.20 -0.0
101,436 - +0.9
101,542 - +0.1
101,694 + +0.8
102,198 - -0.9
102,200 + +0.7
102,221 + +0.6
102,335 - +1.3

Or see this region's nucleotide sequence