Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6834

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15201 and 15202 are separated by 964 nucleotides15202 and 15203 are separated by 468 nucleotides mRNA_6833: 15201 - HMMPfam-Outer mitochondrial membrane transport complex protein-PF10568,HMMPfam-Tom37 C-terminal domain-PF11801, at 231,692 to 232,700 15201 mRNA_6834: 15202 - KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family, at 233,665 to 235,762 15202 mRNA_6835: 15203 - Hypothetical Protein, at 236,231 to 236,767 15203

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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232,680 - +0.7
232,831 - -0.6
232,964 - +0.6
233,152 - -0.6
233,304 + -0.1
233,411 + +0.4
233,442 - -0.6
233,464 + +0.6
233,485 - +0.1
233,513 + -0.4
233,534 - -0.5
233,722 - +0.5
233,742 + +1.4
233,742 + -0.7
233,906 - 15202 mRNA_6834 0.11 -0.1
234,045 - 15202 mRNA_6834 0.18 +0.8
234,048 + 15202 mRNA_6834 0.18 +0.1
234,354 + 15202 mRNA_6834 0.33 +0.4
234,884 - 15202 mRNA_6834 0.58 +0.5
234,889 + 15202 mRNA_6834 0.58 +0.0
234,907 - 15202 mRNA_6834 0.59 +0.0
234,908 + 15202 mRNA_6834 0.59 +0.0
235,152 - 15202 mRNA_6834 0.71 -0.3
235,208 - 15202 mRNA_6834 0.74 -0.8
235,213 + 15202 mRNA_6834 0.74 -0.6
235,217 + 15202 mRNA_6834 0.74 +0.1
235,217 + 15202 mRNA_6834 0.74 +0.3
235,482 - 15202 mRNA_6834 0.87 -0.0
235,496 - 15202 mRNA_6834 0.87 +0.3
235,612 - -0.3
235,793 - +0.2
236,026 + -0.8
236,086 + +0.6
236,202 + -0.2
236,224 - +0.2
236,267 + +1.0
236,397 - 15203 mRNA_6835 0.31 -0.7
236,526 - 15203 mRNA_6835 0.55 +0.4
236,604 + 15203 mRNA_6835 0.69 +0.0
236,621 + 15203 mRNA_6835 0.73 +0.2
236,621 + 15203 mRNA_6835 0.73 +0.2
236,629 + 15203 mRNA_6835 0.74 -0.9
236,636 + 15203 mRNA_6835 0.75 -1.3
236,687 - 15203 mRNA_6835 0.85 +0.1
236,694 + 15203 mRNA_6835 0.86 +1.2
236,710 - 15203 mRNA_6835 0.89 -0.2

Or see this region's nucleotide sequence