Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6853

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15220 and 15221 are separated by 430 nucleotides15221 and 15222 are separated by 305 nucleotides mRNA_6852: 15220 - KOG1337 N-methyltransferase, at 277,485 to 279,463 15220 mRNA_6853: 15221 - Interpro Altered inheritance of mitochondria 5, at 279,894 to 280,567 15221 mRNA_6854: 15222 - K16219 NTMT1, METTL11A, NTM1 protein N-terminal methyltransferase, at 280,873 to 281,900 15222

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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279,322 + +1.9
279,323 - +1.1
279,460 + +0.7
279,629 - -1.2
279,750 - +0.8
280,076 + 15221 mRNA_6853 0.27 +1.0
280,083 - 15221 mRNA_6853 0.28 +0.4
280,325 - 15221 mRNA_6853 0.64 -0.9
280,326 - 15221 mRNA_6853 0.64 -0.6
280,328 - 15221 mRNA_6853 0.64 -0.3
280,344 + 15221 mRNA_6853 0.67 +1.4
280,433 - 15221 mRNA_6853 0.80 +1.4
280,477 - 15221 mRNA_6853 0.86 +1.0
280,490 - 15221 mRNA_6853 0.88 -0.3
280,634 + +1.1
280,786 + -0.3
281,198 + 15222 mRNA_6854 0.32 -0.1
281,238 + 15222 mRNA_6854 0.36 +0.2
281,254 - 15222 mRNA_6854 0.37 +0.3
281,300 - 15222 mRNA_6854 0.42 +0.8
281,341 + 15222 mRNA_6854 0.46 -0.8
281,483 + 15222 mRNA_6854 0.59 -1.2
281,527 - 15222 mRNA_6854 0.64 -0.1

Or see this region's nucleotide sequence