Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6871

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15238 and 15239 are separated by 179 nucleotides15239 and 15240 are separated by 175 nucleotides mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315,464 to 319,765 15238 mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319,945 to 325,501 15239 mRNA_6872: 15240 - KOG3035 Isoamyl acetate-hydrolyzing esterase, at 325,677 to 326,693 15240

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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319,062 - 15238 mRNA_6870 0.84 -1.8
319,068 + 15238 mRNA_6870 0.84 +0.1
319,527 - -0.5
319,665 - -0.9
319,807 - +0.5
319,809 - -1.2
320,246 + -1.2
321,181 - 15239 mRNA_6871 0.22 -0.8
321,351 - 15239 mRNA_6871 0.25 +0.0
321,727 - 15239 mRNA_6871 0.32 +1.5
321,898 + 15239 mRNA_6871 0.35 -0.4
321,929 + 15239 mRNA_6871 0.36 -0.3
322,037 + 15239 mRNA_6871 0.38 +0.6
322,075 - 15239 mRNA_6871 0.38 +0.1
322,384 + 15239 mRNA_6871 0.44 -0.0
322,809 + 15239 mRNA_6871 0.52 +2.3
323,000 - 15239 mRNA_6871 0.55 -0.4
323,809 - 15239 mRNA_6871 0.70 -2.1
323,862 + 15239 mRNA_6871 0.70 +0.3
324,104 + 15239 mRNA_6871 0.75 -0.2
324,247 - 15239 mRNA_6871 0.77 +0.2
324,562 + 15239 mRNA_6871 0.83 +1.0
324,705 + 15239 mRNA_6871 0.86 -0.1
324,714 - 15239 mRNA_6871 0.86 +0.9
324,714 + 15239 mRNA_6871 0.86 -0.5
324,947 - +0.4
324,966 - +0.3
324,970 + +0.9
325,275 - -0.1
325,389 + +0.8
325,443 - -0.4
325,453 + +0.2
325,475 - +0.5
325,563 - +1.9
325,592 - +0.2
325,594 - +1.4
325,598 - +1.6
325,754 - +0.1
325,982 - 15240 mRNA_6872 0.30 -0.4
326,032 - 15240 mRNA_6872 0.35 +1.0
326,483 - 15240 mRNA_6872 0.79 +2.0

Or see this region's nucleotide sequence